I liked a lot of them actually, but my top two faves are Ocarina of Time and WindWaker.

I played the hell out of OoT when it came out, and even quite a while afterward too (I'm talking YEARS afterward ). I thought it was just really fun, and really immersive because I just loved the world it created so much. Also, OoT is pretty special to me, because it was one of the games that my brothers and I put our money together to get.

WindWaker I thought was really cute and interesting, and I liked sailing out on the open sea. It could have gotten tedious for some, but I was really into the music that played while out on the water. Also, I liked how Ganondorf got sympathetic reasons for his motives. Made him more of a fleshed-out character than just simply being an evil guy who wanted power.

Can't say that there were really any Zelda games that I just outright disliked.